Open bioinfoMMS opened 10 months ago
@bioinfoMMS Not sure if you are still facing this issue, but I also ran into this, and think it is related to the fact that we both have our reference files in a subfolder (e.g. references
). The touch
command as is isn't recursing through the references subfolder and modifying the timestamps.
I resolved this by fixing the line with the touch command to this:
touch -c -- references/*
Description of the bug
I am running into an error regarding bwameth indexing/aligning. I am trying to get the bwameth pipeline to work with an existing bwameth index. Looks like there have been similar problems, but I haven't seen how to fix this.
Command used and terminal output
Relevant files
No response
System information
MethylSeq pipeline v2.4.0 Nextflow: v23.10.0 Hardware: HPC Executor: Slurm Container: Singularity