--skip_qualimap parameter to disable qualimap

nf-core / methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

https://nf-co.re/methylseq

MIT License

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--skip_qualimap parameter to disable qualimap #367

Open adamrtalbot opened 8 months ago

adamrtalbot commented 8 months ago

Description of feature

Qualimap has notoriously high memory usage, which means when analysing ultra-high depth samples it can run out of memory and bring the entire pipeline down. We should add a a --skip_qualimap option to enable a user to disable qualimap.