We tried methylseq which's been brilliant. One specific question is about AS-XS tag as they were missing in our output bam file. I am wondering if it is possible to include them? For genomic analysis, we primarily rely these tags to spot problematic mappings.
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Dear nf-core team
We tried methylseq which's been brilliant. One specific question is about AS-XS tag as they were missing in our output bam file. I am wondering if it is possible to include them? For genomic analysis, we primarily rely these tags to spot problematic mappings.
Best