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nf-core / methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
https://nf-co.re/methylseq
MIT License
137 stars 136 forks source link

Bwameth vs bismark #405

Open gevro opened 2 months ago

gevro commented 2 months ago

Hi, I'm curious if you have recommendations on which aligner/process is best to use in specific situations? Or is it purely just use user preference?

gevro commented 1 month ago

Hi, I'm curious if anyone has thoughts on this?