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nf-core / modules

Repository to host tool-specific module files for the Nextflow DSL2 community!
https://nf-co.re/modules
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Failed to create MultiQC 1.14 conda environment #2762

Open ekushele opened 1 year ago

ekushele commented 1 year ago

Have you checked the docs?

Description of the bug

I updated my multiqc from v1.13 to v1.14 (along with the removing params.enable_conda) using nf-core module update -a

Ano now I'm getting the error: 

Caused by:
  Failed to create Conda environment
  command: conda create --mkdir --yes --quiet --prefix /my/path/work/conda/env-26bbe61d6cbca5f71da2d7fcef2c52eb bioconda::multiqc=1.14
  status : 137
  message:

Command used and terminal output

nextflow -config configs/cfnanoseq_configs/slurm_141222.conf run -resume -params-file param_config_with_PoN.yaml cfnanoseq/nf-core-cfnanoseq/main.nf -profile singularity

[28/320cef] process > NFCORE_CFNANOSEQ:CFNANOSEQ:CUSTOM_DUMPSOFTWAREVERSIONS (1)                                                [100%] 1 of 1 ✔
[-        ] process > NFCORE_CFNANOSEQ:CFNANOSEQ:MULTIQC                                                                        -
Error executing process > 'NFCORE_CFNANOSEQ:CFNANOSEQ:MULTIQC'

Caused by:
  Failed to create Conda environment
  command: conda create --mkdir --yes --quiet --prefix /sci/labs/bermanb/ekushele/icore-data/nanopore_cfDNA/cfnanoseq/try_cfnanoseq/work/conda/env-26bbe61d6cbca5f71da2d7fcef2c52eb bioconda::multiqc=1.14
  status : 137
  message:

-[nf-core/cfnanoseq] Pipeline completed with errors-

Relevant files

No response

System information

Nextflow version: 21.10.4 Executor: slurm Container engine and version: Conda OS and version: Linux x86_64 nf-core version: 2.7.2

mbdabrowska1 commented 1 year ago

I also have a similar problem. I run my pipeline with singularity but for some reason it still tries to create a conda environment?