new module: SALMON/ALEVIN (scRNAseq)

nf-core / modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

https://nf-co.re/modules

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new module: SALMON/ALEVIN (scRNAseq) #347

Closed ggabernet closed 1 year ago

ggabernet commented 3 years ago

I think it would be good to have a module for SALMON/ALEVIN

[x] This module does not exist yet with the nf-core modules list command
[x] There is no open pull request for this module
[x] There is no open issue for this module
[x] If I'm planning to work on this module, I added myself to the Assignees to facilitate tracking who is working on the module

Example process: https://github.com/nf-core/scrnaseq/blob/13b7b90fb452108b9423523402a140331761a672/main.nf#L437

KevinMenden commented 3 years ago

Working but outdated version on this PR: https://github.com/nf-core/modules/pull/397

Only the test data needs to be updated.

apeltzer commented 2 years ago

Guess we should consider directly addin alevin-fry instead 👍🏻 Similar to what kallisto-bustools did with kbtools, this looks like the most up2date way of running this sort of analysis.

https://alevin-fry.readthedocs.io/en/latest/collate.html

louperelo commented 1 year ago

Related to closed PR #1420