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nf-core / modules

Repository to host tool-specific module files for the Nextflow DSL2 community!
https://nf-co.re/modules
MIT License
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new module: sequenzautils/seqzbinning #404

Open kaurravneet4123 opened 3 years ago

kaurravneet4123 commented 3 years ago

Sequenza is a tool for copy number variation analysis. Sequenza-utils provides 3 main command line programs to transform common NGS file format - such as FASTA, BAM - to input files for the Sequenza R package

The program- seqz_binning- perform the binning of the seqz file to reduce file size and memory requirement for the analysis.

https://anaconda.org/bioconda/sequenza-utils

I think it would be good to have a module for sequenzautils/seqzbinning

This module does not exist yet with the nf-core modules list command There is no open pull request for this module There is no open issue for this module I'm planning to work on this module, I added myself to the Assignees to work on this module

caravagn commented 2 years ago

Hey great work here. Any plan to include support for the full Sequenza in nf-core? Thanks

kaurravneet4123 commented 2 years ago

Thanks. No immediate plans yet but hopefully in the coming future.

caravagn commented 2 years ago

Oh I see, I think my lab, especially @nicola-calonaci, might contribute this module then.

kaurravneet4123 commented 2 years ago

that would be a great contribution! Thanks.