Open kaurravneet4123 opened 3 years ago
Hey great work here. Any plan to include support for the full Sequenza in nf-core? Thanks
Thanks. No immediate plans yet but hopefully in the coming future.
Oh I see, I think my lab, especially @nicola-calonaci, might contribute this module then.
that would be a great contribution! Thanks.
Sequenza is a tool for copy number variation analysis. Sequenza-utils provides 3 main command line programs to transform common NGS file format - such as FASTA, BAM - to input files for the Sequenza R package
The program- seqz_binning- perform the binning of the seqz file to reduce file size and memory requirement for the analysis.
https://anaconda.org/bioconda/sequenza-utils
I think it would be good to have a module for sequenzautils/seqzbinning
This module does not exist yet with the nf-core modules list command There is no open pull request for this module There is no open issue for this module I'm planning to work on this module, I added myself to the Assignees to work on this module