Closed mari-ga closed 1 month ago
The tool seems to work fine without specifying any of the optional outputs, can we just test that without the additional config?
Currently the prefix is only used in the summary_report_${prefix}.txt
file (which should probably be ${prefix}_summary_report.txt
).
Do we want to rename the output files with ${prefix}?
I added one simple test without nextflow.config, please let me know if it's correct
PR checklist
Closes #XXX
versions.yml
file.label
nf-core modules test <MODULE> --profile docker
nf-core modules test <MODULE> --profile singularity
nf-core modules test <MODULE> --profile conda
nf-core subworkflows test <SUBWORKFLOW> --profile docker
nf-core subworkflows test <SUBWORKFLOW> --profile singularity
nf-core subworkflows test <SUBWORKFLOW> --profile conda