Open edmundmiller opened 2 weeks ago
Essentially we need to add to all the environment.ymls
channels: - conda-forge - bioconda dependencies: # renovate: datasource=conda depName=bioconda/bwa - bwa=0.7.18 # renovate: datasource=conda depName=bioconda/samtools - samtools=1.20 # renovate: datasource=conda depName=bioconda/htslib - htslib=1.20.0
We can also keep the channel definitions if the consensus is that they're important. I've got a PR to enable either https://github.com/nf-core/modules/pull/5400
channels: - conda-forge - bioconda dependencies: # renovate: datasource=conda depName=bioconda/bwa - bioconda::bwa=0.7.18 # renovate: datasource=conda depName=bioconda/samtools - bioconda::samtools=1.20 # renovate: datasource=conda depName=bioconda/htslib - bioconda::htslib=1.20.0
Discussed in the maintainers meeting. Keeping the bioconda:: because we can, and that way we're specific about it. We'll support the dependencies without the channel as well.
bioconda::
Essentially we need to add to all the environment.ymls
We can also keep the channel definitions if the consensus is that they're important. I've got a PR to enable either https://github.com/nf-core/modules/pull/5400