nf-core / modules

Repository to host tool-specific module files for the Nextflow DSL2 community!
https://nf-co.re/modules
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RTGtools missing in modules happy/happy #6637

Open melferink opened 2 months ago

melferink commented 2 months ago

Have you checked the docs?

Description of the bug

To use the vcfeval engine in hap.py executable of RTG(tools) is needed within the container. RTG seems to be absent in current images.

Command used and terminal output

No response

Relevant files

No response

System information

No response

kubranarci commented 3 weeks ago

If there is a plan to update container, I think this issue should be considered: https://github.com/Illumina/hap.py/issues/188

Now we have the same issue for the module.