Integrate the venerable (but still widely used) QDNAseq in nf-core. This is important to add more tools to handle shallow whole-genome sequencing (sWGS).
We already have a prototype working for one of our pipelines so it should be (hopefully) relatively straightforward to adjust for nf-core.
(I plan on working on this during the Barcelona hackathon; I can't find the instructions anymore so I don't remember if I should add it to Projects or not)
Are you going to work on this?
[X] If I'm planning to work on this module, I added myself to the Assignees to facilitate tracking who is working on the module
lbeltrame
commented
5 days ago
Is there an existing module for this?
Is there an open PR for this?
Is there an open issue for this?
Further Information
Integrate the venerable (but still widely used) QDNAseq in nf-core. This is important to add more tools to handle shallow whole-genome sequencing (sWGS). We already have a prototype working for one of our pipelines so it should be (hopefully) relatively straightforward to adjust for nf-core.
(I plan on working on this during the Barcelona hackathon; I can't find the instructions anymore so I don't remember if I should add it to Projects or not)
Are you going to work on this?
Assigneesto facilitate tracking who is working on the module