update module: bowtie2 - Githubissues

nf-core / modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

https://nf-co.re/modules

MIT License

279 stars 696 forks source link

update module: bowtie2 #6821

Open nservant opened 2 hours ago

nservant commented 2 hours ago

Is there an existing module for this?

[x] I have searched for the existing module

Is there an open PR for this?

[x] I have searched for existing PRs

Is there an open issue for this?

[x] I have searched for existing issues

Are you going to work on this?

[ ] If I'm planning to work on this module, I added myself to the Assignees to facilitate tracking who is working on the module

nservant commented 2 hours ago

Could we update the bowtie2 module to version 2.5.4 ? There is a bug in the 2.5.2 with the emptyr eads which makes the nf-core-hic pipeline crashing. According to the bowtie2 changelog, I think the bug has been fixed now.

PS ; I can make a pull request to update the environment.yml but I do not know how to update the mulled singularity image ?