Closed kbestak closed 11 months ago
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nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 07d1b30
+| ✅ 158 tests passed |+
!| ❗ 12 tests had warnings |!
All fixes we wanted to do to Cellpose are done in this PR so I will merge!
Fixed Cellopose custom model usage when multiple samples are given in samplesheet. Added clahe_skip_pyramid parameter so that small images can be a processed (necessary for testing).
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.CHANGELOG.md
is updated.