If create training subset is run, pass crop overview to MultiQC.

nf-core / molkart

A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)

https://nf-co.re/molkart

MIT License

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If create training subset is run, pass crop overview to MultiQC. #29

Closed kbestak closed 10 months ago

kbestak commented 11 months ago

Right now, if Create training subset is run, MultiQC does not collect and report anything, as it is only called after MolkartQC. Presenting the crop overview would be a nice feature to have. Could this be configured somehow so that the MultiQC reports work both for this usecase, and for the expected pipeline run?

kbestak commented 10 months ago

Done https://github.com/nf-core/molkart/pull/36