nf-core / molkart

A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
https://nf-co.re/molkart
MIT License
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Update tower.yml to include all qc metrics #37

Closed kbestak closed 8 months ago

kbestak commented 10 months ago

Description of feature

The tower.yml should be adapted to include all qc metrics, e.g. molkartqc output, crop overview?

kbestak commented 10 months ago

Updated in https://github.com/nf-core/molkart/pull/36, but it is still not included in reports... fix required

kbestak commented 8 months ago

The mentioned issue that the report is not being shown in reports on the Seqera Platform is a non-issue, as the tower.yml is configured properly. However, when running from a cluster with the tower agent, likely because the data cannot be accessed without credentials, and the reports are not shown.