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nf-core / molkart

A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
https://nf-co.re/molkart
MIT License
10 stars 7 forks source link

Optimize parameters for full test data #73

Open kbestak opened 4 months ago

kbestak commented 4 months ago

The current parameters for the full test data are optimized for processing speed instead of output quality. As to not give a false impression of the pipeline, the parameters for Mindagap should be returned to default, and clahe parameters should be adjusted.