nf-core / molkart

A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
https://nf-co.re/molkart
MIT License
10 stars 7 forks source link

Make Mindagap optional #74

Closed kbestak closed 3 weeks ago

kbestak commented 4 months ago

For Molecular Cartography data, Mindagap is a critical tool to adress the blur and duplicated spots. For other platforms that provide a tif and x y z gene transcript table that do not have the grid lines, Mindagap should not be used and it's limiting Molkart's functionality.