nf-core nanoseq issues - Githubissues

nf-core / nanoseq

Nanopore demultiplexing, QC and alignment pipeline

https://nf-co.re/nanoseq

MIT License

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issues

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Different Chromosome counts between samtools and bambu

#278 fbndr98 opened 4 hours ago
0
Add dorado

#277 yuukiiwa opened 1 week ago
2
FILTER 'STRANDBIAS' is not defined in the header

#276 mazzalab opened 2 weeks ago
0
Failed to run medaka consensus

#275 mazzalab opened 2 weeks ago
0
Nf core template merge 2.14.1 [will wait for 2.15 to merge the nf-core/tools template]

#274 yuukiiwa opened 2 weeks ago
1
GTF2BED runs

#273 yuukiiwa closed 2 weeks ago
0
Tahir dev

#272 tahirdme closed 2 weeks ago
1
Command in stage minimap2_transcriptome failed with exit status = 127

#271 rajithadp opened 1 month ago
0
ERROR ~ Error executing process > 'NFCORE_NANOSEQ:NANOSEQ:INPUT_CHECK:SAMPLESHEET_CHECK (sequences_inputNB.csv)'

#270 Jordthomas93 opened 2 months ago
0
SNIFFLES_SORT_VCF return an error due to mkdtemp

#269 samuelecancellieri opened 4 months ago
0
Important! Template update for nf-core/tools v2.14.1

#268 nf-core-bot closed 2 weeks ago
0
Important! Template update for nf-core/tools v2.14.0

#267 nf-core-bot closed 4 months ago
1
Add prefix parameter in nanoplot

#266 LaurenceKuhl closed 1 month ago
1
Stringtie and featurecounts results: counts_gene.txt has more rows than counts_transcript.txt

#265 CHENAO-QIAN opened 5 months ago
0
pipeline terminating early

#264 nick-youngblut opened 6 months ago
2
Important! Template update for nf-core/tools v2.13.1

#263 nf-core-bot closed 4 months ago
1
Important! Template update for nf-core/tools v2.13

#262 nf-core-bot closed 7 months ago
0
Important! Template update for nf-core/tools v2.12

#261 nf-core-bot closed 7 months ago
1
Important! Template update for nf-core/tools v2.11

#260 nf-core-bot closed 8 months ago
1
Fix CHANGELOG

#259 maxulysse closed 9 months ago
1
added nanolyse to subworkflow for qc

#258 RareSeas-Asimov closed 2 months ago
3
Pulling biocontainers:v1.2.0_cv1 Singularity image fails

#257 pcrxn opened 11 months ago
3
add dorado

#256 yuukiiwa closed 2 weeks ago
1
Important! Template update for nf-core/tools v2.10

#255 nf-core-bot closed 11 months ago
0
Pairing between sample and genome is ignored for demultiplexed reads (cDNA mode)

#254 nschan opened 1 year ago
2
Issue with installing/test run

#253 rugilemat closed 1 year ago
2
modular version of the DNA protocol

#252 mvheetve opened 1 year ago
0
Important! Template update for nf-core/tools v2.9

#251 nf-core-bot closed 1 year ago
1
Process `NFCORE_NANOSEQ:NANOSEQ:QCFASTQ_NANOPLOT_FASTQC:NANOPLOT (23046_LEC_R1)` terminated with an error exit status (2)

#250 gzentner opened 1 year ago
5
Add `dorado` as the basecaller

#249 bounlu opened 1 year ago
2
Hotfix: docker.registry outside of docker profile

#248 adamrtalbot closed 1 year ago
2
Merge updates

#247 christopher-hakkaart closed 1 year ago
1
tmp: aws access denied

#246 yuukiiwa closed 1 year ago
2
Update 3 1 dev chris

#245 christopher-hakkaart closed 1 year ago
1
Nf core template merge

#244 yuukiiwa closed 1 year ago
2
Test template merge

#243 yuukiiwa closed 1 year ago
2
Samplesheet error message updated with more useful information if fastq can't be found.

#242 matthewstuartedwards closed 1 year ago
3
Updated m6anet to 2.0.2

#241 matthewstuartedwards closed 1 year ago
1
JAFFA error using docker in nf-core/nanoseq version 3.0.0 and 3.1.0

#240 criphg opened 1 year ago
8
JAFFAL pipeline crashes when singularity is used

#239 marcDabad opened 1 year ago
5
Important! Template update for nf-core/tools v2.8

#238 nf-core-bot closed 1 year ago
2
Update m6anet to version 2

#237 matthewstuartedwards opened 1 year ago
0
Parallelize nanopolish eventalign

#236 matthewstuartedwards opened 1 year ago
0
No profile for Apptainer (Singularity successor)

#235 paulmenzel opened 1 year ago
0
MultiQC report not triggered by FastQC input

#234 ktrappe opened 1 year ago
0
Nanoplot output files clobber each other ..

#233 benbfly opened 1 year ago
4
Update 3_1 dev meta

#232 christopher-hakkaart closed 1 year ago
2
Nanopolish does not include the required HDF5 plugin and/or VBZ decompression

#231 Eric-CH-Chen opened 1 year ago
7
To include profile "test" directRNA programs

#230 Eric-CH-Chen opened 1 year ago
0
3.2 release

#229 yuukiiwa closed 11 months ago
2