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nf-core
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oncoanalyser
A comprehensive cancer DNA/RNA analysis and reporting pipeline
https://nf-co.re/oncoanalyser
MIT License
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Refactor data flow and channel logic
#1
Closed
scwatts
closed
10 months ago
scwatts
commented
10 months ago
simplify pipeline CLI configuration
eligible stages implicitly run for given input rather than being explicitly configured
implicit stage selection done at sample level, and stages run can vary between samples
support tumor-only WGS inputs
standardise process identifiers and labels