Original issue description (FH) [click to show]
I've been unable to run an end-to-end test for the CI since the required reference is too large for the GHA runners. And you're right that the 30.GB request is also too high for the default runners. Instead, this is something I run locally for testing.
The current test executed by the GHA workflow is only a stub test. This is something I planned to improve after the initial release - I suspect it will take a significant amount of time to reduce reference data size so that end-to-end tests work on the restrictive default runners
_Originally posted by @scwatts in https://github.com/nf-core/oncoanalyser/pull/29#discussion_r1683962125_
Edited issue description (SW)
For initial discussions, please see https://github.com/nf-core/oncoanalyser/pull/29#discussion_r1683962125
Original issue description (FH) [click to show]
I've been unable to run an end-to-end test for the CI since the required reference is too large for the GHA runners. And you're right that the 30.GB request is also too high for the default runners. Instead, this is something I run locally for testing. The current test executed by the GHA workflow is only a stub test. This is something I planned to improve after the initial release - I suspect it will take a significant amount of time to reduce reference data size so that end-to-end tests work on the restrictive default runners _Originally posted by @scwatts in https://github.com/nf-core/oncoanalyser/pull/29#discussion_r1683962125_