UMI support in WGTS mode

nf-core / oncoanalyser

A comprehensive cancer DNA/RNA analysis and reporting pipeline

https://nf-co.re/oncoanalyser

MIT License

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UMI support in WGTS mode #73

Open SPPearce opened 3 months ago

SPPearce commented 3 months ago

Description of feature

I have WGS data generated with a library prep that includes UMIs (Claret Biosciences SRSLY for FFPE. The current pipeline code does not allow for umis in the wgts mode, only in the targeted mode.

scwatts commented 3 months ago

Hi @SPPearce thanks for opening the issue. We'll have support for this functionality in an official nf-core release soon - stay tuned!