Evaluation of pangenome construction tools

[subwaystation]

nf-core/pangenome feature request

Hi there!

Describe the solution you'd like

Evaluation of pangenome graph construction tools via mapping rate:

• Short reads: giraffe https://github.com/vgteam/giraffe-sv-paper
• Long reads: GraphAligner https://github.com/maickrau/GraphAligner

At one glance, we can find the best pangenome graph construction tool for the given input data and task!

[subwaystation]

Superseded by #38

[github-actions[bot]]

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[github-actions[bot]]

YAML linting is failing

To keep the code consistent with lots of contributors, we run automated code consistency checks. To fix this CI test, please run:

• Install yaml-lint
  • Install npm then install yaml-lint (npm install -g yaml-lint)
• Fix the markdown errors
  • Run the test locally: yamllint $(find . -type f -name "*.yml" -o -name "*.yaml")
  • Fix any reported errors in your YAML files

Once you push these changes the test should pass, and you can hide this comment :+1:

We highly recommend setting up yaml-lint in your code editor so that this formatting is done automatically on save. Ask about it on Slack for help!

Thanks again for your contribution!