Add tmp dir argument to picardtools sortsam

nf-core / pathogensurveillance

Surveillance of pathogens using population genomics and sequencing

https://nf-co.re/pathogensurveillance

MIT License

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Closed upasana3 closed 6 months ago

upasana3 commented 6 months ago

To allow users to specify TMP_DIR when the tmp dir space is limited.

zachary-foster commented 6 months ago

The temp_dir argument has been added to do this.