BUSCO graphs for assembled genomes

nf-core / pathogensurveillance

Surveillance of pathogens using population genomics and sequencing

https://nf-co.re/pathogensurveillance

MIT License

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BUSCO graphs for assembled genomes #77

Open grunwald opened 5 months ago

grunwald commented 5 months ago

Add BUSCO completeness to any assembled genomes.

logankblair commented 4 months ago

BUSCO generates its completeness plot from a companion script (scripts/generate_plot.py). Instead calling this particular script within a subworkflow, then moving images around, it may be simpler to generate a similar version within the main report R script.

zachary-foster commented 2 weeks ago

We now run busco on all eukaryotic inputs, but it is not yet run on prokaryotes. We could put it in the quality control section for prokaryotes, or do a busco phylogeny for prokaryotes as well (busco is the longest step in making a phylogeny, so might as well make a busco phylogeny if we are running busco).