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nf-core / pathogensurveillance

Surveillance of pathogens using population genomics and sequencing
https://nf-co.re/pathogensurveillance
MIT License
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Make SUBSET module name its output by the sample ID #79

Open zachary-foster opened 5 months ago

zachary-foster commented 5 months ago

Currently, SUBSET names output files by appending "_subset" to the input file name, but this is not consistent with how outputs are named by other processes. It should be named using the sample ID (${prefix}).