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nf-core
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proteinfold
Protein 3D structure prediction pipeline
https://nf-co.re/proteinfold
MIT License
51
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model names in lower case
#184
ziadbkh
closed
4 hours ago
1
Refactor local modules
#183
JoseEspinosa
opened
1 day ago
0
Produce an interactive html report for the predecited strucures
#182
ziadbkh
closed
7 hours ago
1
Produce an interactive html report for the predecited strucures
#181
ziadbkh
closed
2 days ago
2
Implement foldseek
#180
JoseEspinosa
opened
1 week ago
0
Produce an interactive html report
#179
JoseEspinosa
opened
1 week ago
0
Enable running multiple modes in parallel
#178
ziadbkh
closed
1 week ago
1
Enable running several modes in parallel
#177
JoseEspinosa
opened
2 weeks ago
0
Support Ligo-Biosciences/AlphaFold3
#176
adamrtalbot
opened
1 month ago
0
Fix uppercase model preset "alphaFold2-ptm"
#175
JoseEspinosa
closed
1 month ago
1
a3m msa input for colabfold
#174
vagkaratzas
opened
2 months ago
1
Bump version 1.2.0 dev
#173
JoseEspinosa
closed
2 months ago
2
Patch release 1.1.1
#172
JoseEspinosa
closed
2 months ago
1
Installation issues - proteinfold
#171
pnatarajan9
closed
2 months ago
6
Bump version 1.2.0dev
#170
JoseEspinosa
closed
3 months ago
1
Fix download CI
#169
JoseEspinosa
closed
3 months ago
1
Final prerelease updates
#168
JoseEspinosa
closed
3 months ago
1
Update release date
#167
JoseEspinosa
closed
3 months ago
1
Create 2 different parameters for Colabfold and ESMfold number of recycles
#166
JoseEspinosa
closed
3 months ago
2
Always upload logs after trying to launch AWS megatests
#165
adamrtalbot
closed
3 months ago
2
Fix tyop in aws full test CI
#164
JoseEspinosa
closed
3 months ago
1
Fix full test and update release date
#163
JoseEspinosa
closed
3 months ago
1
Fix channel creation for pdb_mmcfiles
#162
JoseEspinosa
closed
3 months ago
1
Modify path to esmfold db in its test_full config
#161
JoseEspinosa
closed
3 months ago
1
Address review comments and update documentation
#160
JoseEspinosa
closed
3 months ago
1
Update magnify paths
#159
JoseEspinosa
closed
4 months ago
1
Dev -> Master for 1.1.0 release
#158
JoseEspinosa
closed
3 months ago
2
Bump v1.1.0
#157
JoseEspinosa
closed
4 months ago
2
Update DBs URLs and Dockerfiles
#156
JoseEspinosa
closed
4 months ago
1
Merge template 2.14.1
#155
JoseEspinosa
closed
4 months ago
1
Important! Template update for nf-core/tools v2.14.1
#154
nf-core-bot
closed
4 months ago
0
Important! Template update for nf-core/tools v2.14.0
#153
nf-core-bot
closed
4 months ago
1
Add skip_multiqc parameter
#152
JoseEspinosa
closed
5 months ago
1
Create test profile for download processes/subworkflows
#151
JoseEspinosa
closed
5 months ago
1
Add mention to the AWS Open Data Sponsorship Program in readme and update licenses in s3
#150
JoseEspinosa
closed
3 months ago
1
Update modules to last version
#149
JoseEspinosa
closed
5 months ago
1
Update DBs
#148
JoseEspinosa
closed
4 months ago
2
Update modules to last version
#147
JoseEspinosa
closed
5 months ago
1
Fix running only first sample when db downloaded
#146
JoseEspinosa
closed
5 months ago
1
Create test profile for download processes
#145
JoseEspinosa
closed
5 months ago
1
Only first item in samplesheet processed when no db parameter provided
#144
JoseEspinosa
closed
5 months ago
1
fix name of mmseq output channel db_indexed
#143
ziadbkh
closed
5 months ago
1
Podman and shifter profiles not working
#142
Qiangong2
closed
4 months ago
6
Use nf-schema for samplesheet parsing
#141
adamrtalbot
closed
5 months ago
2
RuntimeError: HHblits failed. Unrecognized HMM file format in '468479486'
#140
asmaali98
closed
4 months ago
2
Include esmfold small tests and run it in CI
#139
JoseEspinosa
closed
6 months ago
1
Add error to modules that can not use conda
#138
JoseEspinosa
closed
6 months ago
1
Colabfold database files missing
#137
Madhumitha0206
closed
6 months ago
1
Update alphafold images and Dockerfiles
#136
JoseEspinosa
closed
6 months ago
1
SIF files causing AlphaFold container to increase by 7-8GB and causing failures/increased pull costs.
#135
ajfriedman18
closed
6 months ago
1
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