SAGE run in a failing job - Githubissues

nf-core / quantms

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

https://nf-co.re/quantms

MIT License

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SAGE run in a failing job #113

Closed ypriverol closed 7 months ago

ypriverol commented 1 year ago

Description of the bug

When SAGE is run after a failing execution, it give the following error:

Command wrapper:
  ln: failed to create symbolic link '01524_A01_P015424_S00_N01_R1.mzML': File exists

Work dir:
  /hps/nobackup/juan/pride/reanalysis/absolute-expression/tissues/PXD010154/work/51/e706bd1fd9ebdf269ed3c6d378a3c6

Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run

Command used and terminal output

No response

Relevant files

No response

System information

No response

ypriverol commented 7 months ago

this has been solved