Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
NB: the tests require all dependencies of the scripts and hence can not be run on all infrastructure. e.g. there is no openms version for MacOS. So tests might have to be run in containers or some other solution would have to be found.
Description of feature
It would be great to have tests for all the quantms pipeline's Python code.
The automated tests would make the development much more enjoyable and have the benefit to speed up development.
There are a couple of considerations:
tests
folder in./bin/
?Some example of tests for
./bin/diann_convert.py
NB: the tests require all dependencies of the scripts and hence can not be run on all infrastructure. e.g. there is no openms version for MacOS. So tests might have to be run in containers or some other solution would have to be found.