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nf-core / quantms

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
https://nf-co.re/quantms
MIT License
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DIA test data SDRF file is missing required column #134

Closed harper357 closed 8 months ago

harper357 commented 11 months ago

Description of the bug

I was trying to run the test data set using test_full_data.config and got an error saying there was a missing required column in SDRF file. It needs a characteristics[biological replicate] column.

I posted in the nf-core/test-data slack channel and they suggested I make the bug report here first.

Command used and terminal output

Error message:

 The following columns are mandatory and not present in the SDRF: characteristics[biological replicate] -- ERROR
  The column characteristics[biological replicate] is not present in the SDRF -- ERROR
  There were validation errors!


### Relevant files

_No response_

### System information

_No response_
harper357 commented 11 months ago

Related to #39

daichengxin commented 11 months ago

fixed: https://github.com/nf-core/test-datasets/pull/1062