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nf-core / quantms

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
https://nf-co.re/quantms
MIT License
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AWS tests completely failing #23

Closed jpfeuffer closed 2 years ago

jpfeuffer commented 2 years ago

It runs LFQ:ID:DECOYDATABASE AND TMT:ID:DECOYDATABASE.

Why? @daichengxin

daichengxin commented 2 years ago

Sorry, I don't know, I haven't modified this after you modified the analysis pipeline based on the quantification type. It looks like both TMT and LFQ work.
https://github.com/nf-core/quantms/blob/8ff9160827c46bd008ea9f191eb73c13a7057bf7/workflows/quantms.nf#L104-L124