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nf-core / quantms

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
https://nf-co.re/quantms
MIT License
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Config loaded twice #49

Closed fabianegli closed 1 year ago

fabianegli commented 2 years ago

Description of the bug

@drpatelh reported this in Slack

https://nfcore.slack.com/archives/C02Q3FL29PD/p1661255290163269

Hola! Just noticed you have a bug in the dev code where you are trying to load the same config twice: https://github.com/nf-core/quantms/blob/6ffb0c92964cb70e212e18225c769b9e26cb1c11/nextflow.config#L291-L293 https://github.com/nf-core/quantms/blob/6ffb0c92964cb70e212e18225c769b9e26cb1c11/nextflow.config#L337-L338 You should keep the one defined later in the config.

Command used and terminal output

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Relevant files

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System information

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