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nf-core / quantms

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
https://nf-co.re/quantms
MIT License
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Singularity image not available #67

Closed adomingues closed 1 year ago

adomingues commented 1 year ago

Description of the bug

Hi all,

as the title says, I was running the LFQ test pipeline, dev, and it failed due to a missing singularity container which couldn't be downloaded, ghcr.io-openms-openms-executables-latest.img. Maybe relevant, the test pipeline ran successfully with `-r 1.0

Cheers.

Command used and terminal output

`nextflow run nf-core/quantms -r 1.0  -profile singularity,test_lfq --outdir test_pipeline`

Error executing process > 'NFCORE_QUANTMS:QUANTMS:LFQ:PROTEOMICSLFQ (BSA_design_urls_openms_design)'

Caused by:
  Failed to pull singularity image
  command: singularity pull  --name ftp.pride.ebi.ac.uk-pride-resources-tools-ghcr.io-openms-openms-executables-latest.img.img.pulling.1672748804878 https://ftp.pride.ebi.ac.uk/pride/resources/tools/ghcr.io-openms-openms-executables-latest.img > /dev/null
  status : 255
  message:
    INFO:    Downloading network image
    FATAL:   the requested image was not found

Relevant files

nextflow.log

System information

No response

jpfeuffer commented 1 year ago

Thanks for the report. This should not be necessary anymore with the newest release. Also, #91 will use the official nightly containers from GitHub now when -profile dev is given. No self-hosted containers necessary that might not be downloadable.