Closed jemten closed 8 months ago
Let's try to see if we can use the vep version found in nf-core modules rather than the local module.
Also version 111 is out, but that requires an update of the nf-core module. Version 111 has support for a plugin that allows you to annotate variants with pathogenicity scores predicted by VARITY https://github.com/Ensembl/VEP_plugins/blob/release/111/VARITY.pm https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8715197/
done in #482
jemten
commented
8 months ago jemten
commented
8 months ago
Let's try to see if we can use the vep version found in nf-core modules rather than the local module.
Also version 111 is out, but that requires an update of the nf-core module. Version 111 has support for a plugin that allows you to annotate variants with pathogenicity scores predicted by VARITY https://github.com/Ensembl/VEP_plugins/blob/release/111/VARITY.pm https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8715197/