Closed sima-r closed 1 month ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 8b380e3
+| ✅ 183 tests passed |+
#| ❔ 7 tests were ignored |#
!| ❗ 1 tests had warnings |!
@ramprasadn I wasn't sure about the base branch for this PR. Just let me know if this patch branch is not the best choice, And I couldn't figure out the linting errors 😬 plz teach me what the problem is so I know it next time, lol
Hi @sima-r! I have changed the base from patch to dev since these changes will be going into a minor release. As for the lint error, it was related changes in the recent template merge. It has been addressed in the dev branch so a merge with the current dev should fix it (specifically, I added this line to fix this error). https://github.com/nf-core/raredisease/blob/ae1d495ab3bc32b8dc33a1066e63e34fbf5893e2/.nf-core.yml#L10
Thanks @sima-r !
This is now compatible with the PED file format and the documentation.
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).nextflow run . -profile test_one_sample,docker --outdir <OUTDIR>
).nextflow run . -profile debug,test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).