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nf-core / references

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DOCUMENTATION #18

Open maxulysse opened 5 months ago

maxulysse commented 5 months ago

Add proper documentation to explain how to properly use it and implement it in the pipelines

maxulysse commented 5 months ago

I feel like rnaseq currently use the igenomes.config file properly (but does not use igenomes anymore). And sarek use the igenomes.config file properly, and fully uses igenomes. I'm a bit unsure about the rest of the other pipelines, so we'll need to explain that properly. (thinking keys/map/params, and so on)