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nf-core / rnafusion

RNA-seq analysis pipeline for detection of gene-fusions
https://nf-co.re/rnafusion
MIT License
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Arriba download -- proxy issues #495

Open apeltzer opened 1 month ago

apeltzer commented 1 month ago

Description of the bug

could be solved via --no-check-certificate option being added to wget.

Command used and terminal output

Standard run to build reference index

Relevant files

No response

System information

No response

apeltzer commented 1 month ago

https://github.com/nf-core/rnafusion/pull/496

apeltzer commented 1 month ago

More accurately, the problem is when you're behind a proxy and that interferes with SSL certificates in the chain. WGET then will not do the download, your jobs when building the DB will fail.

Attached PR #496 fixes / addresses this.