nf-core / rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
https://nf-co.re/rnaseq
MIT License
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Pipeline fails if sample names have hyphens #1377

Closed pinin4fjords closed 2 months ago

pinin4fjords commented 2 months ago

Description of the bug

Unconfirmed, but had a report that the pipeline failed at the SUMMARIZEDEXPERIMENT steps if sample names contain hyphens. I suspect this is just because of the underlying R script sanitising the names, so should be an easy fix.

Command used and terminal output

No response

Relevant files

No response

System information

No response