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nf-core / rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
https://nf-co.re/rnaseq
MIT License
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Remove need for use of Seqera conda channels #1431

Open pinin4fjords opened 1 month ago

pinin4fjords commented 1 month ago

Description of feature

Seqera generated ARM builds for:

'seqera::rsem=1.3.3 bioconda::star=2.7.10a'
seqera::star=2.6.1d bioconda::samtools=1.21 conda-forge::gawk=5.1.0

This was because ARM builds were missing in Bioconda/ conda-forge.

In time, we should try and get those builds into public channels so we can remove the non-standard dependence on the seqera channel.