nf-core / rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
https://nf-co.re/rnaseq
MIT License
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Sample name changed 3.16 #1449

Open fjosefdz opened 3 weeks ago

fjosefdz commented 3 weeks ago

Description of the bug

Hi, I notice that on version 3.16 in multiqc data my sample names was changed, adding a _1 or _2 at the end: e_pal-1001-29-c-1_r_2
e_pal-1001-34-c-1_r_2 e_pal-1001-52-c-1_r_1 e_pal-1001-58-c-1_r_2 but it is not the case on the merge gene expression matrix (salmon.merged.gene_counts_length_scaled.tsv). this is the data from RSeQC read distribution (multiqc_rseqc_read_distribution.txt) but is the same in others. The samples are not duplicated either.

Any clue why is this happening?

Command used and terminal output

No response

Relevant files

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System information

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