When I run the rnasplice pipeline and I get the result about differential exon usage, I get a table of counts.
I have used the ENSEMBL files (fasta and gtf) to generate the sashimi plots. However, when I look at the counts table mentioned above, for some genes (like BRCA1) I get "merged" identifiers (e.g. ENSG00000267002+ENSG00000012048), so I don't know the exon counts that correspond to each gen.
Description of feature
When I run the rnasplice pipeline and I get the result about differential exon usage, I get a table of counts.
I have used the ENSEMBL files (fasta and gtf) to generate the sashimi plots. However, when I look at the counts table mentioned above, for some genes (like BRCA1) I get "merged" identifiers (e.g. ENSG00000267002+ENSG00000012048), so I don't know the exon counts that correspond to each gen.
I think it is due to overlapping positions.
How could I solve it?
Thank you.