AWSmegatests are failing

nf-core / rnasplice

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis

https://nf-co.re/rnasplice

MIT License

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AWSmegatests are failing #144

Open FriederikeHanssen opened 3 months ago

FriederikeHanssen commented 3 months ago

Description of the bug

Hey! I noticed the megatests are not passing. I bumped the memory for SAMTOOLS_SORT which helps, but it now fails at a subsequent step MISO RUN: https://cloud.seqera.io/orgs/nf-core/workspaces/AWSmegatests/watch/4X2hsSILSFWbba

I have attempted both with and with scratch = true for this step.

here is a PR were I started addressing the memory bump: https://github.com/nf-core/rnasplice/pull/143

Command used and terminal output

No response

Relevant files

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System information

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jma1991 commented 1 month ago

Hi Friederike,

Sorry for the slow reply, and thanks for flagging the test failure! Could you point me to where I can see the mega tests failing? The link you shared just brings me to an empty Seqera Cloud dashboard for my GitHub account. Thanks so much!

FriederikeHanssen commented 4 weeks ago

I think I need to add you to the workspace. Which email would work for you?

jma1991 commented 4 weeks ago

Okay, no problem. Please could you add jma1991@icloud.com email?

FriederikeHanssen commented 4 weeks ago

Added you :)

jma1991 commented 3 weeks ago

Thank you so much! I've raised an issue with the MISO developers since the error is a bit puzzling. Hopefully, with their help, we'll be able to get it sorted out soon.