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nf-core / rnasplice

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
https://nf-co.re/rnasplice
MIT License
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Implement IsoformSwitchAnalyzeR #148

Open jesseangelis opened 1 month ago

jesseangelis commented 1 month ago

Description of feature

IsoformSwitchAnalyzeR is a powerful tool for identifying isoform switches in transcript data. It would allow the end user to analyze and visualize isoform switches.

My colleague discussed with you on 15 February on Slack that we should write a pull request for IsoformSwitchAnalyzeR if we want to include it in the pipeline. This is the issue for that enhancement.

jesseangelis commented 1 month ago

As there is a lot of code for a new tool, I am happy to help with the code review.

jma1991 commented 3 weeks ago

Hi Jesse,

I just wanted to give you a heads-up in case you haven't seen it—I’ve assigned three reviewers to your pull request. We’ll do our best to get this merged as quickly as possible. Apologies again for the long delay, and thanks for your patience!