I am struggling to get past the first step of the pipeline: providing the contrast file in the correct format. The attached file gives the following error: [CRITICAL] The contrast sheet **must** contain these column headers: contrast, treatment, control.
I have tried both the release version (1.0.4) and the dev branch. Perhaps I am overlooking something obvious?
Command used and terminal output
I am using Seqera Platform (formerly knowns as Seqera Tower), so I am not sure what the command would be.
Description of the bug
I am struggling to get past the first step of the pipeline: providing the contrast file in the correct format. The attached file gives the following error:
[CRITICAL] The contrast sheet **must** contain these column headers: contrast, treatment, control.
I have tried both the release version (
1.0.4
) and thedev
branch. Perhaps I am overlooking something obvious?Command used and terminal output
I am using Seqera Platform (formerly knowns as Seqera Tower), so I am not sure what the command would be.
Relevant files
contrasts.csv
System information
Nextflow version 23.10.4 Executor: awsbatch Container engine: docker nf-core/rnasplice:
1.0.4
ordev