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nf-core / rnasplice

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
https://nf-co.re/rnasplice
MIT License
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Checking contrast file fails although the correct header seems to be present #159

Open tomsing1 opened 6 days ago

tomsing1 commented 6 days ago

Description of the bug

I am struggling to get past the first step of the pipeline: providing the contrast file in the correct format. The attached file gives the following error: [CRITICAL] The contrast sheet **must** contain these column headers: contrast, treatment, control.

I have tried both the release version (1.0.4) and the dev branch. Perhaps I am overlooking something obvious?

Command used and terminal output

I am using Seqera Platform (formerly knowns as Seqera Tower), so I am not sure what the command would be.

Relevant files

contrasts.csv

System information

Nextflow version 23.10.4 Executor: awsbatch Container engine: docker nf-core/rnasplice: 1.0.4 or dev