Add the possibility of usiing gzipped fasta and gtf files

nf-core / rnavar

gatk4 RNA variant calling pipeline

https://nf-co.re/rnavar

MIT License

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Add the possibility of usiing gzipped fasta and gtf files #115

Closed nschcolnicov closed 8 months ago

nschcolnicov commented 10 months ago

Description of feature

The pipeline currently only allows for the fasta and gtf file to be in an unzipped format, i'm currently trying to use reference files from a database that has them gzipped, and it doesn't work

nschcolnicov commented 10 months ago

I created a PR for this issue https://github.com/nf-core/rnavar/pull/116

nschcolnicov commented 8 months ago

Pr was merged, closing the issue