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nf-core / rnavar

gatk4 RNA variant calling pipeline
https://nf-co.re/rnavar
MIT License
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preprocessing output directory contains more subdirectories than the number of samples processed #134

Closed nschcolnicov closed 7 months ago

nschcolnicov commented 8 months ago

Description of the bug

When looking at the preprocessing output directory, I see that besides the sample folders there are also some extra folders that contain the "{n}_scattered suffix. Its worth to note that not all samples have this extra folders, only some of them. Not sure if is an issue with the publishDir or the input channel.

Command used and terminal output

nextflow run ../../main.nf -profile bi,cluster --input ../input_backup.csv --outdir . --annotate_tools merge -c ../config.config -resume

Relevant files

config.config contains only reference files. input_backup.csv contains a list of custom samples

System information

dev branch

nschcolnicov commented 7 months ago

I think I was mistaken when creating this issue, because I can no longer reproduce it, maybe I mixed runs inside the same results dir, closing this issue