Single cell somatic mutations

nf-core / rnavar

gatk4 RNA variant calling pipeline

https://nf-co.re/rnavar

MIT License

37 stars 32 forks source link

Single cell somatic mutations #77

Open cutleraging opened 2 years ago

cutleraging commented 2 years ago

Description of feature

Hello, thanks for the great work with this pipeline. I would like to try to use this pipeline to call somatic mutations in single cell rna-seq data. I have my own WGS reference for the cell line I am using. Is there a way to do this?

sinanugur commented 1 year ago

Hi @cutleraging , did you find a solution to this or did you test this pipeline on scRNA-seq data?