Add DeepSomatic to the Sarek Pipeline

nf-core / sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

https://nf-co.re/sarek

MIT License

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Open danielecook opened 8 months ago

danielecook commented 8 months ago

DeepSomatic was recently released as an extension of DeepVariant that enables tumor-normal somatic calling. I would like to try adding this to Sarek.

FriederikeHanssen commented 8 months ago

awesome 🚀