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nf-core / sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
https://nf-co.re/sarek
MIT License
395 stars 403 forks source link

snpeff capitalization in tower.yml #1569

Closed cmatKhan closed 1 month ago

cmatKhan commented 3 months ago

The snpEff reports were not present in the 'reports' section of platform until I changed the capitalization of snpEff to all lower case to match the subdir name

https://github.com/nf-core/sarek/blob/b5b766d3b4ac89864f2fa07441cdc8844e70a79e/tower.yml#L56

https://github.com/nf-core/sarek/blob/b5b766d3b4ac89864f2fa07441cdc8844e70a79e/tower.yml#L54

maxulysse commented 3 months ago

good cath