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nf-core / sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
https://nf-co.re/sarek
MIT License
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Tutorial: CNV calling #1713

Open FriederikeHanssen opened 3 weeks ago

FriederikeHanssen commented 3 weeks ago

Topic

CNVs analysis using Sarek

Tasks to realise the tutorial

1) identify appropriate software 2) simulate CNV data (max size 100Mb each) 3) prepare gitpod / codespaces environment and build code 4) prepare theoretical intro 5) write down hands-on tutorial