nf-core / sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
https://nf-co.re/sarek
MIT License
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Tutorial: long reads analysis #1717

Open lescai opened 3 weeks ago

lescai commented 3 weeks ago

Description of feature

Topic

Long Reads (nanopore, PacBio) analysis using Sarek

Tasks to realise the tutorial

1) check whether https://github.com/nf-core/readsimulator can simulate long-reads or identify appropriate alternative 2) simulate sequence data (max size 100Mb each) 3) prepare gitpod / codespaces environment and build code 4) prepare theoretical intro 5) write down hands-on tutorial